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How to Select a Probiotic and the Future of the Microbiome with Raja Dhir

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January 17, 2024

TLDR: Raja Dhir co-founded Seed Health to pioneer innovations in probiotics and living medicines for human and planetary health. He leads academic collaborations with institutions like MIT and Harvard University and oversees environmental endeavors under SeedLabs.

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  • The Gut Microbiome: a Key Player in Overall HealthPrioritizing the health of the gut microbiome can lead to significant improvements in various conditions, from autoimmune diseases to mood disorders, diabetes, and cancer. Functional medicine offers approaches to repair and restore the gut for better overall well-being.

    The gut microbiome plays a central role in our overall health. It influences various diseases ranging from autoimmune and neurodegenerative diseases to mood disorders and even heart disease, diabetes, and cancer. Despite its importance, the microbiome is often overlooked in traditional medical practices. However, functional medicine recognizes its significance and offers approaches to repair and restore the gut. By removing harmful substances, replenishing beneficial bacteria, and repairing the gut lining, remarkable improvements can occur in patients' health. It is crucial to understand that the gut is connected to every aspect of our well-being, and prioritizing its health can lead to significant benefits for individuals suffering from a wide range of conditions.

  • The Role of the Microbiome in Health and DiseaseMaintaining a balanced microbiome through diet, lifestyle choices, and medications is crucial for overall health, as microbes interact with our immune system and can affect our biology, both positively and negatively.

    The microbiome plays a significant role in our overall health, connecting to various diseases and challenging traditional medicine. The colonization of microbes in the early stages of life begins a lifelong impact on our immune system. Microbes communicate with the immune system directly, through interaction with other microbes, and by producing metabolites. They can protect our gut barrier, regulate immune reactions, and create metabolites that affect our entire biology. However, certain microbes can also be detrimental and cause diseases, including cancer. Therefore, it is crucial to maintain a balance of good and bad bacteria in our gut. This can be achieved through a healthy diet, lifestyle choices, and proper medications.

  • The Importance of Gut Bacteria and Fiber Intake for Overall HealthMaintaining a high-fiber diet and taking probiotics can promote a healthy microbiome, which impacts various aspects of our well-being, from hormone regulation to immune function.

    The composition and diversity of bacteria in our gut play a crucial role in our overall health and well-being. The presence of certain organisms, such as akkermansia eosinophilia, can have both positive and negative effects depending on the dietary inputs they receive. Maintaining a high-fiber diet is essential for providing these organisms with the necessary substrates to promote their positive effects. On the other hand, a low-fiber diet can lead to the degradation of mucin by these organisms, resulting in inflammation and potential food allergies. It is important to understand that everything in our body is interconnected, and taking a probiotic supplement like Seed, which contains a broad spectrum of different strains of beneficial bacteria, can contribute to a healthy microbiome and overall well-being. The microbiome has a significant impact on our biology, regulating hormones, brain chemistry, immune system, and even the production of metabolites in our blood. Ultimately, our microbiome and its interaction with our bodies should be carefully nurtured and supported.

  • The complex network of the gut microbiome and its role in overall health.The gut microbiome plays a crucial role in our health, with the balance of different bacteria strains determining its health. Efforts are being made to understand and utilize this knowledge for better health outcomes.

    The gut microbiome is a complex network of information that plays a crucial role in our overall health. With an estimated hundred thousand petabytes of data in the microbiome, our body is essentially an information superhighway that is regulated by bacterial compounds. The health of our gut microbiome is determined by the balance of different strains and species of bacteria. While research on the microbiome is still evolving, recent advancements in standardized sequencing methods have allowed us to gain clearer insights into its functions. However, it is important to recognize that the microbiome can vary from person to person, and there is still much to learn about how it influences various health outcomes. Efforts are being made to understand and apply this knowledge practically, with projects and companies dedicated to measuring the microbiome and providing recommendations. Ultimately, understanding and nurturing a healthy gut microbiome is essential for achieving good health.

  • Importance of Sample Size and Consistency in Microbiome ResearchAnalyzing a large sample size and ensuring consistent population-level readouts on microbes, genes, and metabolites are essential for reliable results in microbiome research.

    Analyzing microbiome data requires a large sample size to get reliable results. Small cross-sections of data can lead to significant findings, but they may differ across different samples. The future of microbiome research lies in consistent population-level readouts on microbes, their genes, and their metabolites. For accurate recommendations, it is essential to map out the genes of the gut microbes and examine the metabolites produced by those genes. This requires deep metagenomic sequencing and studying the blood serum for microbial metabolites. Current microbiome tests available in the market may not be ready for prime time and can be potentially dangerous if insights are provided without proper analysis. Any claims about specific bacteria and their relation to certain foods should be approached with skepticism.

  • Understanding and Developing Probiotics: A Confusing and Varied ProcessProbiotics are live organisms that offer health benefits, but it's important to clarify their purpose and distinguish them from fermented foods. They have evolved beyond lactobacillus and bifidobacterium and may not be necessary for everyone.

    Probiotics are live organisms that confer a health benefit to their host. However, the understanding and development of probiotics can be confusing and varied. When considering probiotics, it is important to ask whether they are live organisms and what specific health benefit they are intended to provide. Probiotics should not be confused with fermented foods, which are microbially metabolized food matter that carry a microbial load. Probiotics have traditionally consisted of lactobacillus, bifidobacterium, and streptococcus, but the classification has expanded to include a wide range of genus and species variations. It is also worth noting that probiotics may not be necessary for individuals who are generally healthy and do not have specific gastrointestinal or gut microbiome-related issues.

  • The ancestral way to a healthy microbiomeAdopting a lifestyle similar to our ancestors, with a diverse plant and animal-based diet, minimal processed foods, and probiotic usage can promote a healthy microbiome.

    The key to a healthy microbiome may lie in living a lifestyle similar to that of our ancestors. This includes consuming a diverse plant and animal-based diet, minimizing processed foods, and avoiding environmental toxins. Additionally, it is important to limit antibiotic usage and avoid significant disruptions to the gut microbiome, such as moving to a highly urbanized area. For individuals living in a modern environment, probiotic usage can be especially impactful due to potentially low microbial inoculation. When choosing a probiotic, it is important to consider factors such as the form and bioavailability, third-party testing for purity and potency, and the absence of allergens and fillers.

  • The Power of Personalized and Multi-Strain Probiotics in Achieving Optimal HealthChoosing a multi-strain consortium of probiotics that is tailored to specific needs can maximize desired effects and ensure effectiveness, as strains work together to create broader spectrum outcomes.

    Different strains of probiotics have different effects on our bodies. Some strains may be beneficial for weight loss, while others may improve mood or skin health. Personalized probiotics, tailored to specific indications, are emerging as a new approach. Taking a complex consortium of strains can maximize the desired effects, as different strains work together to create broader spectrum outcomes. It is important to consider the purity, potency, and efficacy of probiotics when selecting the right one. Many products claim high numbers of bacteria, but the true potency and viability may be compromised during digestion. To ensure effectiveness, it is crucial to choose a multi-strain consortium with scientific evidence supporting its benefits.

  • The Importance of Bacteria and Prebiotics in Optimizing Gut HealthBalancing bacteria in the gut and incorporating prebiotics can have a profound impact on overall health, including immune system, heart health, and metabolic function.

    Specific bacteria have significant effects on various aspects of our health, such as the GI tract, immune system, heart health, metabolic health, and immune health. The key is to find the right balance of bacteria that can effectively target and release in the upper small intestine. The idea of live bacteria being metabolically active and able to enter the colon is crucial. Additionally, the concept of symbiotics, combining prebiotics and probiotics, plays a role in supporting the growth and flourishing of beneficial bacteria. Polyphenols, found in foods like green tea and pomegranate, serve as prebiotics and can have a profound impact on the gut microbiome. These polyphenols are broken down by the microbiome and contribute to the regulation of mitochondrial function, muscle strength, cardiovascular fitness, and inflammation. Measureable increases in blood levels of postbiotics, such as urolithin A, have been observed after taking certain probiotics. Overall, understanding the relationship between bacteria, prebiotics, and postbiotics is key to optimizing our gut health and overall well-being.

  • Recovering and supporting the gut microbiome after antibiotics.Taking a specific postbiotic derived from pomegranate alongside antibiotics can help restore rare species and increase the abundance of beneficial organisms in the gut microbiome.

    Antibiotics have a significant impact on the gut microbiome, but it is possible for the microbiome to recover over time. While the composition may not return to its original state, the abundance of organisms can be restored within six months to two years. However, each course of antibiotics results in a different microbiome, with potential loss of rare species and the introduction of new organisms. Adding DS oh one, a specific postbiotic derived from pomegranate, alongside antibiotics can promote the rebound of rare species and increase the abundance of butyrate-producing organisms. These effects may help the microbiome recover and support the health of the gut lining. Overall, the study highlights the potential benefits of combining probiotics with antibiotics to mitigate the negative impact on the gut microbiome.

  • The benefits of the probiotic DS 01 for gut health and overall well-being.DS 01, a complex probiotic, helps restore the gut barrier and can improve digestive health, reduce skin inflammation, and potentially lower TMAO levels, offering a comprehensive approach to overall health.

    Antibiotics can damage the gut barrier and increase permeability, leading to issues like leaky gut. However, the probiotic DS 01 has shown a strong rescue effect on these barrier disruptions. It can help return the gut barrier to a less permeable state, reducing the risk of problems associated with a leaky gut. DS 01 is a complex probiotic with 24 different strains and 50 billion active cells. It has been shown to have benefits beyond the gut, including improving digestive health, reducing inflammation on the skin, and potentially lowering TMAO levels, which are linked to heart disease. While it may not be the strongest way to modulate the microbiome, it offers a broad spectrum approach for overall health.

  • The Power of Olive Oil for Gut HealthConsuming olive oil can have a greater impact on gut health than probiotics, and personalized medicine that considers genetic, environmental, and microbiome factors can significantly improve symptoms of irritable bowel syndrome.

    Olive oil, specifically DMB from olive oil, has been shown to be a powerful modulator of TMA and TMAO production in the gut microbiome. So, for those interested in gut health, consuming olive oil can have a greater impact than any probiotic. In clinical studies, researchers have also found promising results in using microbial inoculation to improve the symptoms of irritable bowel syndrome (IBS). IBS is a complex condition influenced by various factors, such as genetics, environment, and the microbiome. While traditional approaches have had limited effectiveness, functional and personalized medicine that considers these factors can make a significant difference in quality of life. The future of microbiome research lies in harnessing the vast amounts of data through advanced technologies like bioinformatics and artificial intelligence to tailor recommendations for individuals.

  • The Future of Microbiome Research: Uncovering Precision Probiotics and Challenging Traditional Medicine.The microbiome field has the potential to transform medicine by uncovering personalized treatments through precision probiotics and emphasizing the interconnectedness of the body. Current probiotics, coupled with a healthy diet, can already greatly impact overall health.

    The future of microbiome research lies in big, controlled, and longitudinal data sets. Tracking the same individuals over time and collecting clean data sets with comprehensive features is challenging but essential for understanding the microbiome. The most deeply phenotyped dataset cohort in the world, consisting of 13,000 people, is being studied to uncover the potential of precision probiotics. However, we are still a few years away from identifying the perfect network of bacteria for specific health outcomes. Personalized pharmacogenomics, nutrition, and probiotics are on the horizon, but we are just at the beginning of this era. The microbiome field has the potential to transform our understanding of medicine, as it challenges traditional disease paradigms and emphasizes the interconnectedness of the body. While we await further advancements, current probiotics, when used alongside a healthy diet, can have a significant impact on overall health.

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